Resources


Resources for miRNA-target data

Source Stype Release Link
miRBase miRNA sequences Release 22.1 http://www.mirbase.org/ftp.shtml
miRDB predicted miRNA Targets Release 6.0: 2019/05 http://www.mirdb.org/miRDB/download.html
TarPmiR prediction tool Release 02/15/2017 http://hulab.ucf.edu/research/projects/miRNA/TarPmiR/
Reactome Pathways GSEA Genesets 06/2023 http://www.reactome.org
NCBI Rattus norvegicus RNA sequences NCBI Annotation Release 108 mRatBN7.2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/10116/108/GCF_015227675.2_mRatBN7
NCBI Bos taurus RNA sequences NCBI Annotation Release 106 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/9913/106/GCF_002263795.1_ARS-UCD1
Danio rerio RNA sequences NCBI Danio rerio Annotation Release 106, GRCz11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/7955/106/GCF_000002035.6_GRCz11/
NCBI Homo sapiens RNA sequences NCBI Homo sapiens Release 110. GRCh38.p14 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/9606/110/GCF_000001405.40_GRCh38
TargetScan predicted miRNA Targets Release 7.2 conserved sites only http://www.targetscan.org/
miRTarBase validated miRNA Targets Release 9.0 https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/index.php
KEGG Pathways GSEA Genesets 09/03/2023 http://www.genome.jp/kegg/";"2023-10-24 15:37:50.000000
NCBI Mus musculus RNA sequences NCBI Annotation Release 109 GRCm39 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/10090/109/GCF_000001635.27_GRCm39
NCBI Canis familiaris RNA sequences NCBI Annotation Release 106 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/9615/106/GCF_014441545.1_ROS_Cfam
Gene Ontology Genesets 06/2023 http://geneontology.org/
Disease Annotation Genesets Version 6.0.0 https://www.alliancegenome.org/downloads

Downloads
Species Link
human
mouse
rat
cow
dog
fish
Statistics
Species MiRNA Genes Transcripts Interactions Validated Entries
human 2656 20016 47561 114745125 1048930
mouse 1978 22173 35404 69940739 82172
rat 764 22216 27792 17294330 768
dog 453 20949 23574 8412314 0
cow 1030 21027 23406 17723100 232
fish 374 26437 25322 5589865 133